Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQ--VRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGARSSEPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
1TO9 Chain:A ((39-246))
-------------WEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKV--QSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSDSA---
General information:
TITO was launched using:
RESULT:
Template:
1TO9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94042 for 1540 contacts (-61.1/contact) +
2D Compatibility (PS) -22500 + (NN) -12026 + (LL) 1488
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -144380.0 ( -93.75 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1TO9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TO9-query.scw
PDB file :
Tito_Scwrl_1TO9.pdb
: