Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVPEGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLYCAIYLGEVRSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVFLGVFWEFYEFAADSFGMNMQKTMLEDGTMLQGHAAVADTMGDLFVDFLGAFVISIIGYFSIRKNKKWMKNFEFKKVDEEVK |
| 2KSD Chain:A ((16-78)) | -------------------------------------------------------------------------MKLGLVRFSMLLALALVVLAIVVQM-AVTMVLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVE-------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KSD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21344 for 289 contacts (-73.9/contact) +
2D Compatibility (PS) -6090 + (NN) 173 + (LL) 15612
1D Compatibility (HY) -5200 + (ID) 350
Total energy: -17199.0 ( -59.51 by residue)
QMean score : -0.058
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