Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIVLIASLIFIAQTCLGFFQVKYYQHHMNKVANKYAGKIGYHLYSEMERLKFRTSAVAILVVNENHIVHECQILTGKTVFAQFKTFTNYHHKELSEILTELSSKNKNTIQEKAIIKTVNSCMKAL
3D5J Chain:A ((3-53))
------------------------------------------------------------MMVSQETVAHVKDLIGQKEVFVAAKTYCPYSKATLSTLFQEL-----NVPKSKALV----------
General information:
TITO was launched using:
RESULT:
Template:
3D5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14554 for 257 contacts (-56.6/contact) +
2D Compatibility (PS) -4984 + (NN) 2193 + (LL) 6728
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -16167.0 ( -62.91 by residue)
QMean score : 0.166
(partial model without unconserved sides chains):
PDB file :
Tito_3D5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D5J-query.scw
PDB file :
Tito_Scwrl_3D5J.pdb
: