Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQDKKVLILYGGGSVERFGTLDKVKAALKSREVGE--FGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMT---YPVGALLQDRYAESL---LQTLIEIGPDVIKEDNHDYNTRATFM--WSATNALNGTLSRGVPQDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERV-WGITSGSDEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQL--DRHGLTNISERGDQTLEVSRQIYTNAL |
3OX4 Chain:A ((42-372)) | --------------------------------------------MNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGSPHDCAKAIALVATNGGEVKDYEGID-KSKKP---ALPLMSINTTAGTASEMTRFCIITDEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAFEAYSSTAATPITDACALKAASMIAKNLKTACDNGKDMPAREAMAY---AQFLAGMAFNNASLGYV----------HAMAHQLGGYYNLPHGVCNAVLLPHVLAYNASVVAGRLKDVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDVPLLADHALKDACALTN-PRQGDQ------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117850 for 2787 contacts (-42.3/contact) +
2D Compatibility (PS) -34347 + (NN) -15266 + (LL) 4820
1D Compatibility (HY) -14400 + (ID) 4700
Total energy: -181743.0 ( -65.21 by residue)
QMean score : 0.426
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