Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVEVEQIAY
4W9T Chain:A ((9-243))
LELLPAVDVRDGQAVRLVHGVSGSETSYGS-PLEAALAWQASGAEWLHLVDLDAAF-GTGDNRALVAEITGAMDIKVELSGGIRDDASLAAALATGCTRVNLGTAALETPEWAAKAIAEHGDRIAVGLDVRGTTLKGR-----GGDLYETLA-RLDSEGCARYVVTDIGKDGTLTGPNLELLKNVCAATDRPVVASGGISSLEDLRALAALVPQGVEGAIVGKALYAKAFTLEEALKV-----
General information:
TITO was launched using:
RESULT:
Template:
4W9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139214 for 2011 contacts (-69.2/contact) +
2D Compatibility (PS) -25109 + (NN) -12177 + (LL) 1032
1D Compatibility (HY) -16400 + (ID) 4400
Total energy: -196268.0 ( -97.60 by residue)
QMean score : 0.568
(partial model without unconserved sides chains):
PDB file :
Tito_4W9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W9T-query.scw
PDB file :
Tito_Scwrl_4W9T.pdb
: