Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTMDPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIEIIKATREAIDKYDLKNVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDMKAAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTFAAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR
4C5L Chain:A ((3-268))
--LKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDT-WSHDVTPLPMDVFEKQLETALSIGP-DAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCKGE----NPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGG------KSYDLYYDGQTFYQLTTDMF--SYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIEH-
General information:
TITO was launched using:
RESULT:
Template:
4C5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106560 for 2343 contacts (-45.5/contact) +
2D Compatibility (PS) -29175 + (NN) -17257 + (LL) 1096
1D Compatibility (HY) -23200 + (ID) 7600
Total energy: -182696.0 ( -77.98 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_4C5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5L-query.scw
PDB file :
Tito_Scwrl_4C5L.pdb
: