Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
1TMY Chain:A ((4-119))
--RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS-
General information:
TITO was launched using:
RESULT:
Template:
1TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79032 for 932 contacts (-84.8/contact) +
2D Compatibility (PS) -12876 + (NN) -11072 + (LL) 448
1D Compatibility (HY) -15200 + (ID) 3750
Total energy: -121482.0 ( -130.35 by residue)
QMean score : 0.668
(partial model without unconserved sides chains):
PDB file :
Tito_1TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMY-query.scw
PDB file :
Tito_Scwrl_1TMY.pdb
: