Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFAKGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKLRDSIK
1N9W Chain:A ((282-307))
--------------------------------------------------------------------ELGYPVGQDLSEEAERLLGEYAKERW-------------
General information:
TITO was launched using:
RESULT:
Template:
1N9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8725 for 115 contacts (-75.9/contact) +
2D Compatibility (PS) -2636 + (NN) 21 + (LL) 7024
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -6966.0 ( -60.57 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1N9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N9W-query.scw
PDB file :
Tito_Scwrl_1N9W.pdb
: