Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLCTISDSQALLEVSYKTFDETFRAQNKPENMDAYLKTNFTAKKLSDELKNP-HSYFYFVFHQEA--IAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKKGLGKELFNQAIEIAKEVDAKKIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFMGDDCQTDIIMIKDL
1WK4 Chain:A ((3-169))
-IRRAGLEDLPGVARVLVDTWRATYRGVV-PEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAF--GPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFDL
General information:
TITO was launched using:
RESULT:
Template:
1WK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71564 for 1239 contacts (-57.8/contact) +
2D Compatibility (PS) -17860 + (NN) -4093 + (LL) 396
1D Compatibility (HY) -9600 + (ID) 2100
Total energy: -104821.0 ( -84.60 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1WK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WK4-query.scw
PDB file :
Tito_Scwrl_1WK4.pdb
: