Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNFTVKVEYVDADGAEIAPSDILTDYHYVSTPKDI-PGYKLREIPHN----ATGNITDTGIIVRYIYDKTIDVRYVDET--GKDLLPVVEIIN-SEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFGKPNQVTVN----YLDENKTPIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTESPQTINIIYQKKAPEQAPSMEPLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPKALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRRRKE |
4FAJ Chain:A ((132-264)) | ----------------------------------------------SDGTQITASDFVAAWQRVVDPKTVSPNVELFSAIKNAKEIASGKQAKDTLAVKSIGEKTLEIELVEPTPYFTDLLSLTAYYPVQQKAIKEYGKDYGVSQKAIVTNGAF-------NLTNLEGVGTSDKWTISKNKEYWDQ---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19927 for 682 contacts (-29.2/contact) +
2D Compatibility (PS) -12805 + (NN) -4310 + (LL) 15204
1D Compatibility (HY) -7600 + (ID) 1700
Total energy: -31138.0 ( -45.66 by residue)
QMean score : 0.245
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