Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGVVIDITSIDFIDSF-IAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSAMDLESGLEKLKQELGE
1TH8 Chain:B ((12-87))
---------DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQI-KNVGGQMVVCAVSPAV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TH8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56324 for 482 contacts (-116.9/contact) +
2D Compatibility (PS) -8328 + (NN) -5989 + (LL) 3192
1D Compatibility (HY) -8800 + (ID) 1200
Total energy: -77449.0 ( -160.68 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1TH8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TH8-query.scw
PDB file :
Tito_Scwrl_1TH8.pdb
: