Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLICGSGASSGFMAAAIRKAAKKRGEQVTVKAASESQIDERINEIDYLLIGPHLAYMLDDLKQKVADKDVLVSIIPQATYGTLNGEKALDLILNMEG
1IIB Chain:A ((4-89))
-KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKP--VEVIDSLLYGKVDG------------
General information:
TITO was launched using:
RESULT:
Template:
1IIB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56433 for 601 contacts (-93.9/contact) +
2D Compatibility (PS) -9569 + (NN) -4795 + (LL) 1604
1D Compatibility (HY) -8000 + (ID) 1300
Total energy: -78493.0 ( -130.60 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_1IIB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IIB-query.scw
PDB file :
Tito_Scwrl_1IIB.pdb
: