Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTINSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
2BKC Chain:A ((7-156))
------VDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLGEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLIAFKASIDKHIWMFKAFLGKAPLE
General information:
TITO was launched using:
RESULT:
Template:
2BKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50676 for 1078 contacts (-47.0/contact) +
2D Compatibility (PS) -16496 + (NN) -10349 + (LL) 420
1D Compatibility (HY) -22000 + (ID) 7350
Total energy: -106451.0 ( -98.75 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2BKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKC-query.scw
PDB file :
Tito_Scwrl_2BKC.pdb
: