Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNMDKETEAFFVQQIKDHFPDHCLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFAISLAVYEDGIGRLAYIYDVTRDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANLSVTRKFPTMWEAVKVSRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVEELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP
4G61 Chain:A ((13-258))
---QQIDKLICSWLKQIDNVIPQLIME-MTTETKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAEEKSNAMITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEE-PPSLKLEDAIISFNAQVMN-LDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVL-----
General information:
TITO was launched using:
RESULT:
Template:
4G61.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132791 for 2031 contacts (-65.4/contact) +
2D Compatibility (PS) -27045 + (NN) -14526 + (LL) 368
1D Compatibility (HY) -16800 + (ID) 4450
Total energy: -195244.0 ( -96.13 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_4G61.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G61-query.scw
PDB file :
Tito_Scwrl_4G61.pdb
: