Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYTITTLGAEPEIQA-ELEQIQQQLFDAGGDLAT--EEGKRAYKLTSE-PVAWLEDRIDIYADEPPEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFAVARVVNYRAGETDIFYKNSELVFRNKKK
3CI1 Chain:A ((7-194))
VKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKDVFR----
General information:
TITO was launched using:
RESULT:
Template:
3CI1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55209 for 1396 contacts (-39.5/contact) +
2D Compatibility (PS) -19743 + (NN) -8665 + (LL) 112
1D Compatibility (HY) -16800 + (ID) 4900
Total energy: -105205.0 ( -75.36 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_3CI1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CI1-query.scw
PDB file :
Tito_Scwrl_3CI1.pdb
: