Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEI-PNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
2BOO Chain:A ((23-242))
---LPEDWQEALLPEFSAPYFHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLS-EQYFFGTRPFSKTNEALEKAGRGPVEWQLPA-
General information:
TITO was launched using:
RESULT:
Template:
2BOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97571 for 1793 contacts (-54.4/contact) +
2D Compatibility (PS) -23276 + (NN) -8858 + (LL) 824
1D Compatibility (HY) -19600 + (ID) 6100
Total energy: -154581.0 ( -86.21 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_2BOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BOO-query.scw
PDB file :
Tito_Scwrl_2BOO.pdb
: