Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVD----VILIQADFDDLASLTEIEKQVFQLDAFIHAAGHAHYSLFQDTTDTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
4AFN Chain:A ((28-268))
-----KVALVTGASRGIGQAIALELGRLGA-VVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4AFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -196510 for 2011 contacts (-97.7/contact) +
2D Compatibility (PS) -25291 + (NN) -2413 + (LL) 392
1D Compatibility (HY) -14800 + (ID) 4200
Total energy: -242822.0 ( -120.75 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4AFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AFN-query.scw
PDB file :
Tito_Scwrl_4AFN.pdb
: