Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLTATEALMK-MKEKGYKHTDKREFLINLLARKNKYLTAKDVLENMKDDFPGISFDTIYRNLSLFVELGIFEETDLSGERNFRLACTHE---HHHHHFICMKCGKTKEIM-MCPMDFLTEA--LPGYQIDGHKFEVYGECPECLQAS
4LMY Chain:A ((9-147))
-ALDAYENVLEHLREKHIRITETRKAIISYMIQSTEHPSADKIYRDLQPNFPNMSLATVYNNLKVLVDEGFVSELKISND----LTTYYDFMGHQHVNVVCEICGKIADFMDVDVMDIAKEAHEQTGYKVTRIPVIAYGICPDC----
General information:
TITO was launched using:
RESULT:
Template:
4LMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62212 for 816 contacts (-76.2/contact) +
2D Compatibility (PS) -14332 + (NN) -3979 + (LL) 872
1D Compatibility (HY) -12000 + (ID) 1950
Total energy: -93601.0 ( -114.71 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_4LMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LMY-query.scw
PDB file :
Tito_Scwrl_4LMY.pdb
: