Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIEILQNNGITDFTHLSFVELDLSK----DEGWKEAMLDCEYVLSVASPVFFGKFKNEEELISPAIEGITRILQAAKEA---KVKRVVMTSNFGAIGFSNADKN--SIT------TEAYWTDELAKGLSAYEKSKLIAEKEAWKFME---NETELEFATINPVAIFGPSQSN-----HVSGSFDLLKNLLNGSMK-RVINIPLNVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVDKMPKKTLPNAAIRAAALFSKHAKEGELMINMNRQISNSKARDVLGWKPISTKEEAVLAAVDSLAKYGLLD |
| 4PVD Chain:A ((2-291)) | ---SVFVSGANGFIAQHIVDLLLKEDYKVIGSARSQEKAENLTEAFGNNPKFSME----VVPDISKLDAFDHVFQKHGKDIKIVLHTASPFCFDITDSERDLLIPAVNGVKGILHSIKKYAADSVERVVLTSSYAAV-FDMAKENDKSLTFNEESWNPATWESCQSDPVNAYCGSKKFAEKAAWEFLEENRDSVKFELTAVNPVYVFGPQMFDKDVKKHLNTSCELVNSLMHLSPEDKIPELFGGYIDVRDVAKAHLVAFQKRETIGQRLIVS-EARFTMQDVLDILNEDFPVLKGNIP------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124823 for 2124 contacts (-58.8/contact) +
2D Compatibility (PS) -29299 + (NN) -11824 + (LL) 5680
1D Compatibility (HY) -20800 + (ID) 4600
Total energy: -185666.0 ( -87.41 by residue)
QMean score : 0.510
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