Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTEEVRCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLKHYNEIQDVALTDDDFLRILNQISSKQALIVYVVDIFDFDGSWLPGLPRFAGSNPVLLVGNKEDVLPKSLKRDKLTRWMRTRAKEQGLAATDVVLVSAEKGHGFDTLLEKIDELR------NGQDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLVDTPGIINHHQMAHFIDTTTLKAITPKKEVKPAVFQLNEEQTLFLGALARLDYVSGGRKSLVVYVSNNLPIHRTKLEKAEALYEKQAGLVLQPPTEEDMKTLPKLVPYSFTVKEKADIVFSGLGWVTIPEGGAKVTAWVPEGVSATIRTSLV |
| 1PUJ Chain:A ((102-176)) | ---------------------------------------------------------------------------------------------------------------------------------------------------EILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKK-----NIA------------QWVKVGKELELLDTPGIL------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PUJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -29479 for 299 contacts (-98.6/contact) +
2D Compatibility (PS) -6275 + (NN) -1118 + (LL) 20492
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -22380.0 ( -74.85 by residue)
QMean score : 0.684
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