Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKGFIELYRGTK-KESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEVVKISTGETGIDALQDKPSK
4USJ Chain:C ((20-129))
-----RIEAIFRPWRLPFVIDTLSKYGIRGLTNTPVKGVGVQGGSRERYAGTEFGPSNLVDKEKLDIVVSRAQVDAVVRLVAASAYTGEIGDGKIFVHPVAEVVRIRTAETGLEA-------
General information:
TITO was launched using:
RESULT:
Template:
4USJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38484 for 673 contacts (-57.2/contact) +
2D Compatibility (PS) -12332 + (NN) -7463 + (LL) 416
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -67963.0 ( -100.99 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4USJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4USJ-query.scw
PDB file :
Tito_Scwrl_4USJ.pdb
: