Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVA--SDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDTDLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGV----KNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
2JJ4 Chain:A ((50-287))
--RTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIID----------------
General information:
TITO was launched using:
RESULT:
Template:
2JJ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171959 for 1924 contacts (-89.4/contact) +
2D Compatibility (PS) -25413 + (NN) -5600 + (LL) 820
1D Compatibility (HY) -20400 + (ID) 4000
Total energy: -226552.0 ( -117.75 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2JJ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JJ4-query.scw
PDB file :
Tito_Scwrl_2JJ4.pdb
: