Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELIKGNIASPKGFYADGKHAGLKRK-RNDIGWIYSEVPANAAAVYTMNQMQAAPIFVTKDSFQSNAKLQAIIVNSGNANACTGNQGMLDALAMRAQTAEKLEIPLDSVAVASTGIIGDMLPMDKINAGIEMLEKQTGNAADFEEA---ILTTDTFQKQISFQTEIGGRKVTMSGVAKGSGMIHPNMATMLAFITTDAAI-PAELLQKLLKIKVDKTFNQITVDGDTSTNDMVVVMANGCAENPMLQEGTADFAKFADMFQAVTEHLAKSIARDGEGATKLIEVQVNGATKTEDARMIAKKIVSSSLVKTAAFGGDGNWGRIICAIGYSGGRFAPD--NITIKIGGIEILNHSSQTIYNQQALDA----YLEEEHIIIEVDLHIGLESGTAWGCDLSYEYVKINACYRT |
| 1VZ8 Chain:A ((8-390)) | ---------TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAV-ADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGG-FDRAARAIMTTDTRPKEV--RVSVGG--ATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQ-DRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLA-------GEVDAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPP-------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180375 for 3290 contacts (-54.8/contact) +
2D Compatibility (PS) -40286 + (NN) -20039 + (LL) 2408
1D Compatibility (HY) -24400 + (ID) 7100
Total energy: -269792.0 ( -82.00 by residue)
QMean score : 0.400
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