Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQALQ----TGGLCPINWQPGEKTIV
2Z9S Chain:A ((8-184))
-----IGHPAPSFKATAVMPDGQFKDISLSD--YKGKYVVFFFYPLDFTFVSPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPGSDTI-
General information:
TITO was launched using:
RESULT:
Template:
2Z9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114850 for 1335 contacts (-86.0/contact) +
2D Compatibility (PS) -18274 + (NN) -5196 + (LL) 1032
1D Compatibility (HY) -18000 + (ID) 4300
Total energy: -159588.0 ( -119.54 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_2Z9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z9S-query.scw
PDB file :
Tito_Scwrl_2Z9S.pdb
: