Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSNQLLPYLDYDLISENPKILCGFSDITALATAIYTQTELITYSG-AHFSSFS-MEKGLDYVMESFSDCLLQKE--PFALKESATWSDD--EWYLDQENRNFIPNEGLVVMQPGVAEGIIIGGNLCTLNLLQGTEYMPNLA-GTILFIED---DFMTIPETFDRDLESLLSQPGA-DEIEGMVIGRFQQKTAMTAEKLAY-IIETKTALQKIPVISGADFGHTQPIATFPIGGTARID-TNQTDKIQIIRH |
| 3U1B Chain:A ((6-330)) | -LPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMNSNSLLPYIDYDAFQNNPKIMIGYSDATALLLGIYAKTGIPTFYGPALVPSFGEFEPFVDDTYKYFLETLLHDQALPYNIKQPLFWSDEFINWEEKTKEKELRPNNWISVTN-GQATGRVIGGNLNTIQGIWGSPYMPCIQEGDILFIEDSRKDAATIERSF-----SFLKINGVFDKVSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFDCCHTHPMITMPIGVQVKMDATNKTIHI----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U1B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -191954 for 2715 contacts (-70.7/contact) +
2D Compatibility (PS) -32440 + (NN) -5576 + (LL) 952
1D Compatibility (HY) -22400 + (ID) 5800
Total energy: -257218.0 ( -94.74 by residue)
QMean score : 0.497
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