Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSNATLKEAVDVLKKTGVRITPQRHAILEFLINSHTHPTADDIYRALEGNFPNMSVATVYNNLRVFRDAGLIKELSYG-DASSRFDFSTSNHYHAICNVCGKIVDFHYPGLDEVEHFAAHMTGYEIDNHRLEVYGICPACKEKQSNN
4LMY Chain:A ((20-149))
--------------LREKHIRITETRKAIISYMIQSTEHPSADKIYRDLQPNFPNMSLATVYNNLKVLVDEGFVSELKISNDLTTYYDFMGHQHVNVVCEICGKIADFMDVDVMDIAKEAHEQTGYKVTRIPVIAYGICPDCQA-----
General information:
TITO was launched using:
RESULT:
Template:
4LMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68512 for 782 contacts (-87.6/contact) +
2D Compatibility (PS) -14091 + (NN) -5714 + (LL) 1424
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -104093.0 ( -133.11 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4LMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LMY-query.scw
PDB file :
Tito_Scwrl_4LMY.pdb
: