Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKVMIVYASMTGNTQEIADILGEELEKYDIEVEIEECISVDPEDLLE-YDGALIGGYTYDDG--QLPDEFVDFYEDMADVDFSGKVCASFGSGDTFYDEYCLTVDLVETRLKEQGATVPVAGLKVDLDPDEEDVVRAESYAKTFVEALKG
1XYY Chain:A ((2-130))
-AKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDCIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDP---------------------
General information:
TITO was launched using:
RESULT:
Template:
1XYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74286 for 1044 contacts (-71.2/contact) +
2D Compatibility (PS) -13379 + (NN) -7715 + (LL) 1960
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -101720.0 ( -97.43 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1XYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XYY-query.scw
PDB file :
Tito_Scwrl_1XYY.pdb
: