Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNENLITITGLTKKYRKRK--PLNDINLSLQKGKIIGLLGPNGAGKTTLLNAISGLLKPTSGTIN-----LAENSKIAYLPSEDFLPNMVICDYFRIYHSF-------FPDFDQEKAKQMIRSFGINIKENTKY-------------LSKGNAAKVMLALILCRDVDLYLLDEPFSEIDLISRDD---LIKSIATFLKEDATLVVTTHLIQDMEMMFDEIIFLKRGKIIEQIDTETLREEYRKSVMDYYREVFGHA
1OXT Chain:A ((4-228))
-----IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL-IVPPEDRKIGMVFQTW-ALYPNLTAFENIAFPLTNMKMSKEEIRK---RVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL-------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127953 for 1446 contacts (-88.5/contact) +
2D Compatibility (PS) -20662 + (NN) -5045 + (LL) 2524
1D Compatibility (HY) -14800 + (ID) 3550
Total energy: -169486.0 ( -117.21 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1OXT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXT-query.scw
PDB file :
Tito_Scwrl_1OXT.pdb
: