Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIAIFASGSGSNFQALVD---DEFIKPYVKLLVCDKPNAYVLERANKHDIPVFLFEAKNYPDKEAFETEILLELRRLEIDLLVLAGYMRLIGPTLLAEFPEQIVNLHPSLLPEFKGKDAIGQAIQANVSGTGVTAHFVDAGMDTGPIIDQVKVTIETAETTDTLAEKIHQVEHIFYPKVIRGLIQNGGND
2YWR Chain:A ((2-188))
LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQD----
General information:
TITO was launched using:
RESULT:
Template:
2YWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162413 for 1491 contacts (-108.9/contact) +
2D Compatibility (PS) -20250 + (NN) -14777 + (LL) -500
1D Compatibility (HY) -18400 + (ID) 3350
Total energy: -219690.0 ( -147.34 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_2YWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWR-query.scw
PDB file :
Tito_Scwrl_2YWR.pdb
: