Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEGKHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFNQKMAEEFAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGVLGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTYERRPDLLKNYPLTDKQKTWLKEWSDSK
4MCD Chain:A ((1-239))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGA-KVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL---------SFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKE-----
General information:
TITO was launched using:
RESULT:
Template:
4MCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146431 for 1676 contacts (-87.4/contact) +
2D Compatibility (PS) -24869 + (NN) -8046 + (LL) -32
1D Compatibility (HY) -24000 + (ID) 5250
Total energy: -208628.0 ( -124.48 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4MCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MCD-query.scw
PDB file :
Tito_Scwrl_4MCD.pdb
: