Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VLQTEMKVIQQTEIADKVYELILTGECVAGMS-PGQFLMLKPSRSDLLMRRPISICSYDKTAKTCILLYRVEGDGTRDFSKLSEGDTI-DVLGPLGKGFDIDTTPAPKTALLIGGGIGVPPMYQLGKELAEKGVQVMFVNGFQSAKDSFYAQEMAEYGTVHIATVDGSLGTQGFVTD-ITKNFPEEP-DVIYSCGPKAMLQ--AVKASFPETKTYLSLEERMACGIGACYACVCPKADDTNKQFK-VCEDGPVFRADEVKL
4YLF Chain:A ((8-251))
------EIVKKVKIAEDVFDFWIHSPSVSKEARPGQFVVIRLHEKG--ERIPLTVADTKPEEGLFRMVVKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIENY---GNVLLVGGGVGIATLYPIAKALKEAGNNITTVLGARTKDYLIMVDEFKEISDVLLVTDDGSAGMKGVVTDAMDKLFRERKFDICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVT----VSGQIKFACVDGPEFRGEEV--
General information:
TITO was launched using:
RESULT:
Template:
4YLF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141808 for 1955 contacts (-72.5/contact) +
2D Compatibility (PS) -25467 + (NN) -8545 + (LL) 1364
1D Compatibility (HY) -17600 + (ID) 3900
Total energy: -195956.0 ( -100.23 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_4YLF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YLF-query.scw
PDB file :
Tito_Scwrl_4YLF.pdb
: