Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNQSETKALEALQNGSDIRGIAIATEKYQITLTDERVEKIAYGFAKWLKEEKKVEGQAKVAIGHDSRLSAERLKAALVKGLTFAGIDVVDVGLATTPAMFMATQYEDYDCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADKSFIENGLNLGKVTKQDLLSTYAADLTDKIRAGITDAADKMKPLQGSHIIVDAGNGAGGFFAEKVLAELGADISESQFLDPDGNFPNHIPNPDNEEAMASLKKAVLASGADLGVIFDTDVDRAAIMDKNGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLQAFIEAKGGKQHRFKRGYRNVINEALRLNANGTPSEIAIEVSGHAALKENYF-LDDGAYLIAKILMTYATLRKNGQDLPDLIADLKEPAESEEIRLSITANDFKAYGKEALADFLTFVEADPDMELEPVNQEGIRVNTKGALGEGWFLLRMSLHEPVMPMNLESDEAGGIRKVKDRLAGFFATKADLKM |
2FKM Chain:X ((17-444)) | ----------------DIRGV----------VGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANV--LEGKSGVMLTGDHNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLASGV--GSVEQVDILPRYFKQIRDDIAMA--------KPMK---VVVDCGNGVAGVIAPQLIEALGCSVI-PLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGH-SLIKKKMK----ETGALLAGEMSGHVFFKERWFGFDDGIYSAARLL---EILSQDQRDSEHVFSAFPSDISTPEINITVT-EDSKFAIIEALQRDAQWGEGN------ITTLDGVRVDYP----KGWGLVRASNTTPVLVLRFEADTEEELERIK--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FKM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136407 for 4001 contacts (-34.1/contact) +
2D Compatibility (PS) -46220 + (NN) -26051 + (LL) 5260
1D Compatibility (HY) -29200 + (ID) 6700
Total energy: -239318.0 ( -59.81 by residue)
QMean score : 0.544
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