Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEMVEFSSLDVPVFGNLSEMLEEIKPDCVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRTIAESK-KIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTGVKTAEMMAETREFVKQGAADEVELIEGARGAEYEGMRIHSVRLPGLVAHQEVIFGAEGQGLTIRHDSYDRISFMSGVALSVRKTKELETLIYGLENILD
1YL6 Chain:A ((2-243))
-RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA---------------------GDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLD
General information:
TITO was launched using:
RESULT:
Template:
1YL6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122397 for 1915 contacts (-63.9/contact) +
2D Compatibility (PS) -25519 + (NN) -6032 + (LL) 1608
1D Compatibility (HY) -19600 + (ID) 5800
Total energy: -177740.0 ( -92.81 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1YL6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YL6-query.scw
PDB file :
Tito_Scwrl_1YL6.pdb
: