Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRR--PAEEIIKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVD--YEDGHVKGVTLKDGQEISASAVIVAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELKKTGAGTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKADLEETAEYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYNITCALVTGHTAGAYAAEVSNA |
| 2GQF Chain:A ((8-397)) | -----IIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAH----YLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLF-CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISL-PVTITALCGK-----SFYNQLLFTHRGISGPAVLQISNY--------WQPTESVEIDLLPNHNVEE---EINQAKQSSPKQMLKTILVRLLPKKLVELWIEQGIVQDEV-IANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAW-----SSAYACALS-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230153 for 3376 contacts (-68.2/contact) +
2D Compatibility (PS) -42188 + (NN) -14245 + (LL) 2512
1D Compatibility (HY) -30400 + (ID) 6550
Total energy: -321024.0 ( -95.09 by residue)
QMean score : 0.502
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