Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVKLSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDDELVERDIRAVVDVAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTGGATAEDIALMR---KTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSG---EKPAKPDNY
3OA3 Chain:A ((56-274))
VSIAQIIDHTQLSLSATGSQIDVLCAEAKEYGFATVCVRPDYVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAK-DAILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASAGVKIVNETRL---------
General information:
TITO was launched using:
RESULT:
Template:
3OA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108410 for 1804 contacts (-60.1/contact) +
2D Compatibility (PS) -23826 + (NN) -13231 + (LL) -76
1D Compatibility (HY) -15600 + (ID) 5150
Total energy: -166293.0 ( -92.18 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_3OA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OA3-query.scw
PDB file :
Tito_Scwrl_3OA3.pdb
: