Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIGMELYENKHNQTILDDAKAVYTKDAATTNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
1QXA Chain:A ((46-232))
---------------------------------------------------------AHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKII--
General information:
TITO was launched using:
RESULT:
Template:
1QXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64166 for 1427 contacts (-45.0/contact) +
2D Compatibility (PS) -19937 + (NN) -6021 + (LL) 4392
1D Compatibility (HY) -19600 + (ID) 3650
Total energy: -108982.0 ( -76.37 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1QXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QXA-query.scw
PDB file :
Tito_Scwrl_1QXA.pdb
: