Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALK--DGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNA----VSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
3SIK Chain:A ((10-132))
---------------------------ATKLADGKYNIAFTVWKGDKDESSRMNRYFESPATLTVKNGKQYVSFKVKDSTSIKSFQVEKDGQFVETTVLSENKKDNTRVVEFEVADLSKKLNGKVKINI--PIINYNASYDIRFVFDGNSIK-------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3SIK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46985 for 765 contacts (-61.4/contact) +
2D Compatibility (PS) -13103 + (NN) -6219 + (LL) 6096
1D Compatibility (HY) -10000 + (ID) 2500
Total energy: -72711.0 ( -95.05 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3SIK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SIK-query.scw
PDB file :
Tito_Scwrl_3SIK.pdb
: