Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNAGILGVGKYVPEKIVTNFDLEKIMDTSDEWIRTRTGIEERRIARDDEYTHDLAYEAAKVAIKNAGLTPDDIDLFIVATVTQEATFPSVANIIQDRLGAKNAAGMDVEAACAGFTFGVVTAAQFIKTGAYKNIVVVGADKLSKITNWDDRTTAVLFGDGAGAVVMGPVSDDHGLLSFDLGSDGSGGKYL-----------NLDENKKIYMNGREVFRFAVRQMGEASLRVLERAGLEKEDLDLLIPHQANIRIMEASRERLNLPEEKLMKTVHKYGNTSSSSIALALVDAVEEGRIKDNDNVLLVGFGGGLTWGALIIRWGK |
1UB7 Chain:A ((2-320)) | --SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRHPGALEGVDAVIVATNTPDALFPDTAALVQARFGLK-AFAYDLLAGCPGWIYALAQAHALVEAGLAQKVLAVGAEALSKIIDWNDRATAVLFGDGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAARERLGLPWERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGAGLTWAAAVLTWG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UB7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195586 for 2917 contacts (-67.1/contact) +
2D Compatibility (PS) -33302 + (NN) -14319 + (LL) 112
1D Compatibility (HY) -28400 + (ID) 7850
Total energy: -279345.0 ( -95.76 by residue)
QMean score : 0.559
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