Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
3LNT Chain:A ((4-229))
-KLVLIRHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPGDERAPYADPRYAKVPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNIPNGVPLVYELDESLTPIRHYYL--
General information:
TITO was launched using:
RESULT:
Template:
3LNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85679 for 1854 contacts (-46.2/contact) +
2D Compatibility (PS) -24378 + (NN) -8943 + (LL) 196
1D Compatibility (HY) -22000 + (ID) 6900
Total energy: -147704.0 ( -79.67 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3LNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LNT-query.scw
PDB file :
Tito_Scwrl_3LNT.pdb
: