Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEKLMYPLDKVVNDTK--TTFIQDTVVKINKDEKTVTLDA--------------------NGDISYDYLLIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKW----KTDP-RDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVP--REKVRIYCMEAAPKVLPQFDAKLVDYGVGVLEDRGVEFH----VGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIE------ASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVK-----------GETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
| 4GAV Chain:A ((11-454)) | --KPNVLILGSGWGAISFLKHIDTKKYNVSII--SPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKF-LPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRG-LAVNDFLQVKGSNNIFAIGDNAFA-------GLPPTAQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYL---SMILSARSRLKVF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224520 for 3146 contacts (-71.4/contact) +
2D Compatibility (PS) -40942 + (NN) -9781 + (LL) 568
1D Compatibility (HY) -26800 + (ID) 6050
Total energy: -307525.0 ( -97.75 by residue)
QMean score : 0.504
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