Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVLVIGANGKIGRLLVEKLAMEKGFFV-RAMVRKAEQVSELEKLG--AKPIIADLKK--DFHYAYDEIEA-VIFTAGSGGHTPASETV-----------NIDQNGAIKAIETAKEKGVRRFIIVSSYGADNPENGPESL--AHYLKAKQAADEELKKSGLDYTIVRPVGLSDDPA------TGKIAEVSGKPKTNIPRADVADFISEALSEKSSFYKTYTI----ESGDTPIKQFFN
1YBM Chain:A ((6-242))
-TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK---EKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKP-----EFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDF--
General information:
TITO was launched using:
RESULT:
Template:
1YBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76000 for 1578 contacts (-48.2/contact) +
2D Compatibility (PS) -22549 + (NN) -15831 + (LL) 976
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -130104.0 ( -82.45 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1YBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBM-query.scw
PDB file :
Tito_Scwrl_1YBM.pdb
: