Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENDSLCGGHILQEGLHVRFARMHIWAVTRYTSNGRMGMRIFDRWWMDFGGG
1PTF Chain:A ((10-31))
-----------AETGIHARPATLLVQTASKFNS-------------------
General information:
TITO was launched using:
RESULT:
Template:
1PTF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5560 for 83 contacts (-67.0/contact) +
2D Compatibility (PS) -2304 + (NN) -109 + (LL) 876
1D Compatibility (HY) 400 + (ID) 250
Total energy: -6947.0 ( -83.70 by residue)
QMean score : -0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1PTF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PTF-query.scw
PDB file :
Tito_Scwrl_1PTF.pdb
: