Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKDLLYTEEHEWVKAD-DGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLEEVEEADVKALLSSDDYEKVLD
3A8K Chain:E ((2-126))
-NVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESV-AASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLE
General information:
TITO was launched using:
RESULT:
Template:
3A8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45751 for 967 contacts (-47.3/contact) +
2D Compatibility (PS) -13165 + (NN) -4791 + (LL) 272
1D Compatibility (HY) -12800 + (ID) 3150
Total energy: -79385.0 ( -82.09 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_3A8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A8K-query.scw
PDB file :
Tito_Scwrl_3A8K.pdb
: