Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIERGV-----PGGQMVNTAEVENYPGF-DSILGPDLSDKMLSGAKQFGAEYAYGDIKEV-VDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSG----RGVSYCAVCDGA--FFKNRELIVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKK--VTGAKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGI-TDDEGYIVTDE-EMRTNLPGIFAAGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK
1VDC Chain:A ((11-325))---------LCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATK-FLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEI----------


General information:
TITO was launched using:
RESULT:

Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179735 for 2591 contacts (-69.4/contact) +
2D Compatibility (PS) -31559 + (NN) -3074 + (LL) 2124
1D Compatibility (HY) -26800 + (ID) 6950
Total energy: -245994.0 ( -94.94 by residue)
QMean score : 0.502

(partial model without unconserved sides chains):
PDB file : Tito_1VDC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VDC-query.scw
PDB file : Tito_Scwrl_1VDC.pdb: