Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENERKRILELVKQGIISTEEALTLLENISKKEGKTAAKENIRRSAAPREEEQIEEETKEEPSYDYSKGWNNQGNPYTPPKSRKRRPEPTPENHERDEEEGGENSSKDREDSMRNMVNDLSQAGEKIGSFLNSAFKQVKDMPFPFLTSTKIERDFIYHDTTLSILEFEIANGNIEFKPSDS-NDIKVHAMIKLFKEYPEDEALKIFFDKTTLRVDEETLRFESKSKQ--------IVTNLTVYLPRREYDYVSVKMLNGNFHMDE-LSGRDLFVK-TTNGNISIGTL-NATLAEIE-SINGNVRIQNGEIRDVALK-TFNGNVAVKGNYYSTNLQ-TKNGNVNYQLTGNEATFLKAK-TGAGNIDVVVPATIGVDGRFHTNLGKLLLDLKDAEILESKTESVSKSITFTKLPNAADSSLKIEAEATTGSVKIRDVK |
| 3LYC Chain:A ((27-249)) | -------------------------------------------------------------------------------------------------------------------------------------------------GDGNITTENIPVS--EYDCLELEGGGMVVNYTQSDAPEGLEIKTDR-------------NIFEKYEFNVENHKLKIRPKKEFRKHTNFRPTEFMVTANSRN--LKKLAA-AGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVGIAEFSIAGSGTVRAFDC--TMDELECKIAGSGDIEAFVVNKI--KAEI-AGSGSVKYKGDP--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 21699 for 1608 contacts (13.5/contact) +
2D Compatibility (PS) -21073 + (NN) 4805 + (LL) 11308
1D Compatibility (HY) 14000 + (ID) 800
Total energy: 29939.0 ( 18.62 by residue)
QMean score : 0.058
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