Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQIISALIFPCLLVILFARITYNRYVGLLLMVILIAASAKLGYTSSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF
1OED Chain:E ((221-373))
--FYIINIIAPCVLISSLVVLVY--------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14164 for 87 contacts (-162.8/contact) +
2D Compatibility (PS) -2200 + (NN) -1131 + (LL) 5456
1D Compatibility (HY) -3200 + (ID) 300
Total energy: -15539.0 ( -178.61 by residue)
QMean score : -0.122
(partial model without unconserved sides chains):
PDB file :
Tito_1OED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OED-query.scw
PDB file :
Tito_Scwrl_1OED.pdb
: