Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VEAKLQVGVLGFGTVGSGVIHILEEHQEKISQVTG-----------YNISVKKVLVRDLEKNRRYETKGFELTTNPSDVLDDPEIAVVVEVMGSITTARE---YILQALKAGKHVVTANKD-LIA-LHGDELVAVAQANNCDLFYEASVAGGIPILRTIVNSLAADKIQKVMGIVNGTTNFMLTKMTTEKKSYEDVLAEAQALGFAESDPTNDVDGIDAARKMVIMTRLAFGMNVNLDNVETNGIRGISPEDIEVAYQLGYKIKLVGTAEETNGTVNVNVGPVLLPKAHPLAGVNYENNAVFVTGAAVGETMFYGPGAGELPTATSVVSDLITVAKNSRLGTNGNAFNSYKHETKHTPKEQVFSKYYLRLTMDDKTGTFLKLTQIFAEAGVGFDKILQQPYDDFTATVVIVTHSTSQAQLEQAIARVKDEPEMQMLAKYSVVEG |
| 3DO5 Chain:A ((3-325)) | ----IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKR--ETGMLRDDAKAIEVVRSADYDVLIEASVTR----EGVNYIREALKRGKHVVTSNKGPLVAEFHG--LMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIAN-TIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSRE----KLKVSPRLVPFHHPLAIKGTMNAAMFKTDTA-GSIFVAGRGAGKEETASAILSDLYEIYAG----------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DO5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184441 for 2516 contacts (-73.3/contact) +
2D Compatibility (PS) -32269 + (NN) -1342 + (LL) 9172
1D Compatibility (HY) -25600 + (ID) 6150
Total energy: -240630.0 ( -95.64 by residue)
QMean score : 0.402
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