Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
1ZIO Chain:A ((1-215))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGL
General information:
TITO was launched using:
RESULT:
Template:
1ZIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65781 for 1659 contacts (-39.7/contact) +
2D Compatibility (PS) -23663 + (NN) -16564 + (LL) 0
1D Compatibility (HY) -25200 + (ID) 7300
Total energy: -138508.0 ( -83.49 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIO-query.scw
PDB file :
Tito_Scwrl_1ZIO.pdb
: