Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEYIEDDNAGTIRVFLKYGAT-------GERVITGLKRISKPGLRVYAKSTEVPKVLNGLGIAIVSTSQGVLTDKEARAKQVGGEVLAYVW
1FKA Chain:H ((3-138))
---TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW
General information:
TITO was launched using:
RESULT:
Template:
1FKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56737 for 941 contacts (-60.3/contact) +
2D Compatibility (PS) -13682 + (NN) -285 + (LL) 608
1D Compatibility (HY) -12800 + (ID) 3650
Total energy: -86546.0 ( -91.97 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1FKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKA-query.scw
PDB file :
Tito_Scwrl_1FKA.pdb
: