Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGKDLRNYKGIKKIMAILAVFTLVQGAAIIVMAITLARAITDLFHEHPFQSVTIQIGLFAGAYFLRHFLNVWKKQIVYRYAAKLAKTMREELLDSLFALGPRFARAEGTGKVVTMVMEGVADFRNYLELFLPKMMNMAIIPAMIWVYIAFQDWTSAFILMITLPILIVFMIILGLAAKKQADSQFETYRVLSNHFVDSLKGLETLKYLG----LSHDHEGKIASVSSRYRKATMK-TLRVAFMSSFALDFFTMLSIALVALFLGL-GLIDGNMNLPIALSVLILAPEYFLPVREVGSDY----HATLDGQEAGRVIQGIIDQAKAEKPEMDALPLTTFAENTEF--SFENITVKHGADDADSLHKASFTVKGFEKIGIIGATGAGKSTLIDVLSGFLTPTSGEFHWNGKSGASLASTDWQTQVTYIPQHPYLFHDTIAGNIRFYHPNSTEDEMKKAAESAGLNKLVAGLEDGYETLVGEAGRMLSGGQEQRVALARAFLTDRPVVLMDEPTAHLDIETEYELKKPMLDLFE--DRLVFFATHRLHWMLEMDRIIVLDHGAVVETGTHEELLSRKGFYYNLVKAQLEEV |
| 4MYC Chain:A ((202-570)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDSLINFEAVKYFNNEKYLADKYNGSLMN----YRDSQIKVSQSLAFLNSGQNLIFTTALTAM--MYMGCTGVIGGNLTVGDLVLINQLVFQLSVPLNFLGSVYRDLKQSLIDMETLFKLRKNEVKIKNAERPLM--LP-----ENVPYDITFENVTFGYHPD-RKILKNASFTIPAGWKTAIVGSSGSGKSTILKLVFRFYDPESGRILINGRDIKEYDIDALRKVIGVVPQDTPLFNDTIWENVKFGRIDATDEEVITVVEKAQLAPLIKKLPQGFDTIVGERGLMISGGEKQRLAIARVLLKNARIMFFDEATSALDTHTEQALLRTIRDNFTSGSRTSVYIAHRLRTIADADKIIVLDNGRVREEGKHLELLAMPGSLY---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146565 for 2417 contacts (-60.6/contact) +
2D Compatibility (PS) -38188 + (NN) -14387 + (LL) 22176
1D Compatibility (HY) -28800 + (ID) 6100
Total energy: -211864.0 ( -87.66 by residue)
QMean score : 0.411
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